Publications

Found 18 results

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Baryshnikova A, Costanzo M, Kim Y, Ding H, Koh J, Toufighi K, Youn J, Ou J, Luis B, Bandyopadhyay S, Hibbs MA, Hess DC, Gingras A, Bader GD, Troyanskaya OG, Brown GW, Andrews B, Boone C, Myers CL.  2010.  Quantitative analysis of fitness and genetic interactions in yeast on a genome scale. Nature Methods. 7:1017–24. Abstract
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Gehlenborg N, O'Donoghue SI, Baliga NS, Goesmann A, Hibbs MA, Kitano H, Kohlbacher O, Neuweger H, Schneider R, Tenenbaum D, Gavin A.  2010.  Visualization of omics data for systems biology. Nature Methods. 7:S56-S68. Abstract
Guan Y, Ackert-Bicknell CL, Kell B, Troyanskaya OG, Hibbs MA.  2010.  Functional genomics complements quantitative genetics in identifying disease-gene associations. PLoS Computational Biology. 6:e1000991. Abstract
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Haarer B, Viggiano S, Hibbs MA, Troyanskaya OG, Amberg DC.  2007.  Modeling complex genetic interactions in a simple eukaryotic genome: actin displays a rich spectrum of complex haploinsufficiencies. Genes & Development. 21:148–59. Abstract
Hess DC, Myers CL, Huttenhower C, Hibbs MA, Hayes AP, Paw J, Clore JJ, Mendoza RM, Luis B, Nislow C, Giaever G, Costanzo M, Troyanskaya OG, Caudy AA.  2009.  Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis. PLoS Genetics. 5:e1000407. Abstract
Hibbs MA, Dirksen NC, Li K, Troyanskaya OG.  2005.  Visualization methods for statistical analysis of microarray clusters. BMC Bioinformatics. 6:115. Abstract
Hibbs MA, Wallace G, Dunham M, Li K, Troyanskaya OG.  2007.  Viewing the Larger Context of Genomic Data through Horizontal Integration. 11th International Conference Information Visualization (IV07). :326–334. Abstract
Hibbs MA, Hess DC, Myers CL, Huttenhower C, Li K, Troyanskaya OG.  2007.  Exploring the functional landscape of gene expression: directed search of large microarray compendia. Bioinformatics. 23:2692–9. Abstract
Hibbs MA.  2009.  The Effects of Pre-processing and Parameter Choices on Searches Through Large Gene Expression Data Collections. IEEE Int Conf on Genomic Signal Processing and Statistics (GENSiPs). Abstract
Hibbs MA, Myers CL, Huttenhower C, Hess DC, Li K, Caudy AA, Troyanskaya OG.  2009.  Directing experimental biology: a case study in mitochondrial biogenesis. PLoS Computational Biology. 5:e1000322. Abstract
Huttenhower C, Hibbs MA, Myers CL, Troyanskaya OG.  2006.  A scalable method for integration and functional analysis of multiple microarray datasets. Bioinformatics. 22:2890–7. Abstract
Huttenhower C, Flamholz AI, Landis JN, Sahi S, Myers CL, Olszewski KL, Hibbs MA, Siemers NO, Troyanskaya OG, Coller HA.  2007.  Nearest Neighbor Networks: clustering expression data based on gene neighborhoods. BMC Bioinformatics. 8:250. Abstract
Huttenhower C, Hibbs MA, Myers CL, Caudy AA, Hess DC, Troyanskaya OG.  2009.  The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction. Bioinformatics. Abstract
Huttenhower C, Haley EM, Hibbs MA, Dumeaux V, Barrett DR, Coller HA, Troyanskaya OG.  2009.  Exploring the human genome with functional maps. Genome Research. 19:1093–106. Abstract
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Myers CL, Barrett DR, Hibbs MA, Huttenhower C, Troyanskaya OG.  2006.  Finding function: evaluation methods for functional genomic data. BMC Genomics. 7:187. Abstract
Myers CL, Robson D, Wible A, Hibbs MA, Chiriac C, Theesfeld CL, Dolinski K, Troyanskaya OG.  2005.  Discovery of biological networks from diverse functional genomic data. Genome Biology. 6:R114. Abstract
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Sealfon RSG, Hibbs MA, Huttenhower C, Myers CL, Troyanskaya OG.  2006.  GOLEM: an interactive graph-based gene-ontology navigation and analysis tool. BMC Bioinformatics. 7:443. Abstract
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Wallace G, Anshus OJ, Bi P, Chen H, Chen Y, Clark D, Cook P, Finkelstein A, Funkhouser T, Gupta A, Hibbs MA, Li K, Liu Z, Samanta R, Sukthankar R, Troyanskaya OG.  2005.  Tools and applications for large-scale display walls. IEEE computer graphics and applications. 25:24–33.